Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115187577Sorting nexin-9-like. (626 aa)    
Predicted Functional Partners:
ENSSTUP00000037119
Synaptojanin 1.
   
 
 0.947
snx33
Sorting nexin 33.
   
  0.944
SNX18
Sorting nexin 18.
   
  0.940
ENSSTUP00000063818
annotation not available
   
  0.940
pik3cd
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta.
    
  0.887
ENSSTUP00000111631
Si:rp71-17i16.5.
    
  0.885
ENSSTUP00000007099
annotation not available
    
  0.868
LOC115206538
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform-like.
    
  0.868
PIK3CB
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta.
    
  0.868
PIK3CA
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like.
    
  0.868
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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