Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115203970Nucleolar transcription factor 1-like. (798 aa)    
Predicted Functional Partners:
polr1a
RNA polymerase I subunit A.
    
 0.946
polr1b
RNA polymerase I subunit B.
    
 0.923
ENSSTUP00000068398
RNA polymerase I subunit E.
    
 0.923
ENSSTUP00000069836
annotation not available
    
 0.923
taf1a
TATA-box binding protein associated factor, RNA polymerase I subunit A.
   
 0.907
LOC115204110
RNA polymerase I-specific transcription initiation factor RRN3-like.
    
 0.817
LOC115171553
RNA polymerase I-specific transcription initiation factor RRN3-like.
    
 0.817
gtf2h3
General transcription factor IIH subunit 3.
    
 0.813
ENSSTUP00000093510
Actin related protein 8.
    
 0.804
LOC115197712
General transcription factor IIH subunit 1-like.
   
 0.781
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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