Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001387annotation not available (341 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
  0.586
nme8
NME/NM23 family member 8.
    
  0.559
LOC115155393
Thioredoxin domain-containing protein 3 homolog.
    
  0.559
ENSSTUP00000012541
annotation not available
   
  0.553
LOC115199132
Leucine-rich repeat and guanylate kinase domain-containing protein-like.
   
  0.553
ENSSTUP00000113714
Leucine-rich repeats and guanylate kinase domain containing.
   
  0.553
RANBP2
RAN binding protein 2.
    
  0.517
ENSSTUP00000027355
annotation not available
    
  0.517
LOC115161061
E3 SUMO-protein ligase RanBP2-like.
    
  0.517
LOC115192191
Cytosolic phospholipase A2-like.
    
  0.513
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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