Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001388Prospero homeobox 1a. (703 aa)    
Predicted Functional Partners:
ENSSTUP00000019140
Forkhead box P4.
      
 0.707
hus1
HUS1 checkpoint clamp component.
    
   0.648
LOC115163601
Serpin H1-like.
      
 0.638
LOC115206494
Serpin H1-like.
      
 0.638
LOC115205461
Histone deacetylase 3-like.
    
   0.622
LOC115174931
Histone deacetylase 3.
    
   0.622
LOC115151982
COUP transcription factor 2-like.
   
 
 0.621
ENSSTUP00000104211
Nuclear receptor subfamily 2, group F, member 2.
   
 
 0.621
ccbe1
Collagen and calcium binding EGF domains 1.
      
 0.614
LOC115163325
T-box transcription factor TBX2b-like.
      
 0.612
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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