LOC115203514 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115203514

Sentrin-specific protease 8-like. (212 aa)

Predicted Functional Partners:

NEDD8

0.969

LOC115157326

0.969

ENSSTUP00000023474

0.969

LOC115198409

0.969

ENSSTUP00000003385

0.861

ACO2

0.861

ACO2-2

0.861

LOC115201323

0.861

LOC115153587

0.861

ireb2

0.861

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACO2	ENSSTUP00000003385	ENSSTUP00000062662	ENSSTUP00000003385	Aconitate hydratase, mitochondrial-like.	annotation not available	0.786
ACO2	LOC115203514	ENSSTUP00000062662	ENSSTUP00000001415	Aconitate hydratase, mitochondrial-like.	Sentrin-specific protease 8-like.	0.861
ACO2	ireb2	ENSSTUP00000062662	ENSSTUP00000089795	Aconitate hydratase, mitochondrial-like.	Iron responsive element binding protein 2.	0.786
ACO2-2	ENSSTUP00000003385	ENSSTUP00000071957	ENSSTUP00000003385	Aconitate hydratase, mitochondrial-like.	annotation not available	0.786
ACO2-2	LOC115203514	ENSSTUP00000071957	ENSSTUP00000001415	Aconitate hydratase, mitochondrial-like.	Sentrin-specific protease 8-like.	0.861
ACO2-2	ireb2	ENSSTUP00000071957	ENSSTUP00000089795	Aconitate hydratase, mitochondrial-like.	Iron responsive element binding protein 2.	0.786
ENSSTUP00000003385	ACO2	ENSSTUP00000003385	ENSSTUP00000062662	annotation not available	Aconitate hydratase, mitochondrial-like.	0.786
ENSSTUP00000003385	ACO2-2	ENSSTUP00000003385	ENSSTUP00000071957	annotation not available	Aconitate hydratase, mitochondrial-like.	0.786
ENSSTUP00000003385	ENSSTUP00000023474	ENSSTUP00000003385	ENSSTUP00000023474	annotation not available	annotation not available	0.610
ENSSTUP00000003385	LOC115153587	ENSSTUP00000003385	ENSSTUP00000081138	annotation not available	Aconitate hydratase, mitochondrial-like.	0.786
ENSSTUP00000003385	LOC115157326	ENSSTUP00000003385	ENSSTUP00000020029	annotation not available	NEDD8.	0.610
ENSSTUP00000003385	LOC115198409	ENSSTUP00000003385	ENSSTUP00000058475	annotation not available	NEDD8.	0.610
ENSSTUP00000003385	LOC115201323	ENSSTUP00000003385	ENSSTUP00000079608	annotation not available	Aconitate hydratase, mitochondrial-like.	0.786
ENSSTUP00000003385	LOC115203514	ENSSTUP00000003385	ENSSTUP00000001415	annotation not available	Sentrin-specific protease 8-like.	0.861
ENSSTUP00000003385	NEDD8	ENSSTUP00000003385	ENSSTUP00000008193	annotation not available	NEDD8-like.	0.610
ENSSTUP00000023474	ENSSTUP00000003385	ENSSTUP00000023474	ENSSTUP00000003385	annotation not available	annotation not available	0.610
ENSSTUP00000023474	LOC115203514	ENSSTUP00000023474	ENSSTUP00000001415	annotation not available	Sentrin-specific protease 8-like.	0.969
ENSSTUP00000023474	ireb2	ENSSTUP00000023474	ENSSTUP00000089795	annotation not available	Iron responsive element binding protein 2.	0.610
LOC115153587	ENSSTUP00000003385	ENSSTUP00000081138	ENSSTUP00000003385	Aconitate hydratase, mitochondrial-like.	annotation not available	0.786
LOC115153587	LOC115203514	ENSSTUP00000081138	ENSSTUP00000001415	Aconitate hydratase, mitochondrial-like.	Sentrin-specific protease 8-like.	0.861