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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115201308N-acetylmuramoyl-L-alanine amidase-like. (515 aa)    
Predicted Functional Partners:
LOC115208616
N-acetylmuramoyl-L-alanine amidase-like.
  
 
0.890
ENSSTUP00000071140
annotation not available
  
 
0.889
ENSSTUP00000070689
Peptidoglycan recognition protein 5.
  
 
0.842
ENSSTUP00000037115
Phosphatidylinositol glycan anchor biosynthesis, class U.
     
 0.717
pigu
Phosphatidylinositol glycan anchor biosynthesis class U.
     
 0.717
ENSSTUP00000001977
annotation not available
   
 0.668
ENSSTUP00000021648
annotation not available
   
 0.668
LOC115153063
Serine racemase-like.
   
 0.668
LOC115172388
L-serine dehydratase/L-threonine deaminase-like.
   
 0.668
LOC115180232
Phenylserine dehydratase-like.
   
 0.668
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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