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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115193602Sodium/calcium exchanger 1-like. (944 aa)    
Predicted Functional Partners:
ENSSTUP00000013834
Fraser extracellular matrix complex subunit 1.
   
0.877
ENSSTUP00000019007
Fraser extracellular matrix complex subunit 1.
   
0.877
LOC115169621
cAMP-dependent protein kinase catalytic subunit beta-like.
   
 
 0.808
LOC115157154
cAMP-dependent protein kinase catalytic subunit beta.
   
 
 0.808
prkacb
Protein kinase cAMP-activated catalytic subunit beta.
   
 
 0.662
LOC115171557
cAMP-dependent protein kinase catalytic subunit alpha.
   
 
 0.649
ENSSTUP00000055834
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.
   
 
 0.649
ENSSTUP00000058430
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.
   
 
 0.649
LOC115171557-2
cAMP-dependent protein kinase catalytic subunit alpha.
   
 
 0.649
ENSSTUP00000077407
Solute carrier family 8 member B1.
     
 0.540
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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