Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115168098Mitochondrial basic amino acids transporter-like. (310 aa)    
Predicted Functional Partners:
LOC115165234
Mitochondrial carnitine/acylcarnitine carrier protein-like.
     
  0.785
ENSSTUP00000104095
Solute carrier family 25 member 20.
     
  0.785
LOC115169272
Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like.
      
 0.694
LOC115163594
Serine/threonine-protein kinase NLK.
      
 0.694
LOC115174519
Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like.
      
 0.694
LOC115174521
WD repeat-containing protein 20-like.
      
 0.694
ENSSTUP00000001762
Solute carrier family 25 member 48.
     
  0.624
LOC115205724
Solute carrier family 25 member 48-like.
     
  0.624
LOC115189906
Solute carrier family 25 member 48-like.
     
  0.624
SLC25A45
Solute carrier family 25 member 45.
     
  0.624
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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