Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115168231Solute carrier family 25 member 47-A-like. (305 aa)    
Predicted Functional Partners:
LOC115173835
60S ribosomal protein L14-like.
   
 
 0.803
LOC115175330
60S ribosomal protein L14-like.
   
 
 0.803
ENSSTUP00000004077
annotation not available
   
 
 0.784
ENSSTUP00000064321
annotation not available
   
 
 0.784
LOC115189223
60S ribosomal protein L18.
   
  0.742
LOC115176369
60S ribosomal protein L18.
   
  0.742
LOC115173574
40S ribosomal protein S18.
   
 
 0.738
RPS18
40S ribosomal protein S18.
   
 
 0.738
ENSSTUP00000087574
Ribosomal protein L6.
   
 
 0.733
LOC115200292
60S ribosomal protein L6-like.
   
 
 0.733
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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