Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001490annotation not available (462 aa)    
Predicted Functional Partners:
LOC115173775
Splicing factor 3A subunit 3.
   
 0.919
LOC115175697
Splicing factor 3A subunit 3-like.
   
 0.919
ddx46
DEAD-box helicase 46.
    
 0.911
LOC115165358
Small nuclear ribonucleoprotein G.
   
 0.908
LOC115200019
Splicing factor 3A subunit 1-like.
   
 0.902
ENSSTUP00000088660
Splicing factor 3a, subunit 1.
   
 0.902
LOC115175771
Splicing factor 3B subunit 4-like.
   
 0.900
LOC115173709
Splicing factor 3B subunit 4-like.
   
 0.900
sf3b5
Splicing factor 3b subunit 5.
   
 0.887
ENSSTUP00000087862
Splicing factor 3b, subunit 5.
   
 0.887
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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