Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
LOC115195610Phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like. (661 aa)    
Predicted Functional Partners:
LOC115205223
Malate synthase-like.
     
 0.955
ACLY
ATP-citrate synthase.
    
 0.950
ACLY-2
ATP-citrate synthase-like.
    
 0.950
ENSSTUP00000003019
Pyruvate dehydrogenase E1 beta subunit.
     
 0.912
pdhb
Pyruvate dehydrogenase E1 beta subunit.
     
 0.912
ENSSTUP00000007342
Malate dehydrogenase 2, NAD (mitochondrial).
    
 0.911
LOC115148790
Malate dehydrogenase, mitochondrial-like.
    
 0.911
CS
Citrate synthase.
  
 
 0.910
LOC115193507
Malate dehydrogenase, cytoplasmic-like.
  
 
 0.905
LOC115152771
Malate dehydrogenase, cytoplasmic-like.
  
 
 0.905
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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