Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115194724Cyclin-dependent kinase-like 2. (780 aa)    
Predicted Functional Partners:
LOC115152999
NAD-dependent protein deacetylase sirtuin-1-like.
    
 
 0.586
LOC115194015
NAD-dependent protein deacetylase sirtuin-1-like.
    
 
 0.586
nphp1
Nephrocystin 1.
    
 
 0.550
tmem231
Transmembrane protein 231.
      
 0.548
NPHP4
Nephrocystin 4.
   
  
 0.514
fancl
FA complementation group L.
      
 0.504
ENSSTUP00000014894
Transmembrane protein 218.
      
 0.499
tmem218
Transmembrane protein 218.
      
 0.499
cep19
Centrosomal protein 19.
      
 0.471
ENSSTUP00000028857
annotation not available
      
 0.459
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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