Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115207467Usher syndrome type-1G protein homolog. (484 aa)    
Predicted Functional Partners:
ENSSTUP00000042341
Usher syndrome 1C.
   
 0.950
LOC115192778
Harmonin-like.
   
 0.950
ENSSTUP00000041984
annotation not available
   
 0.778
ENSSTUP00000098450
annotation not available
   
 0.778
ENSSTUP00000103326
Myosin VIIAb.
   
 0.778
LOC115162910
Cadherin-23-like.
    
 0.719
ENSSTUP00000113223
Cadherin-related 23.
    
 0.719
LOC115161451
Unconventional myosin-X-like.
   
 0.693
ENSSTUP00000040863
Myosin XVB.
   
 0.693
LOC115158894
Unconventional myosin-VIIa-like.
   
 0.693
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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