Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plekhh2Pleckstrin homology, MyTH4 and FERM domain containing H2. (1484 aa)    
Predicted Functional Partners:
ENSSTUP00000078376
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.740
plekhf2
Pleckstrin homology and FYVE domain containing 2.
      
 0.716
LOC115176653
Pleckstrin homology domain-containing family F member 2.
      
 0.716
LOC115158130
Protein FAM43A-like.
      
 0.703
ENSSTUP00000035009
Family with sequence similarity 43 member A.
      
 0.703
LOC115157312
TOX high mobility group box family member 4-A-like.
      
 0.680
LOC115169495
TOX high mobility group box family member 4-A-like.
      
 0.680
LOC115163160
Ribosome biogenesis protein NOP53-like.
      
 0.615
LOC115206114
Ribosome biogenesis protein NOP53-like.
      
 0.615
LOC115197315
Leucine-rich repeat-containing protein 4C-like.
      
 0.600
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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