Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
LOC115194564E3 ubiquitin/ISG15 ligase TRIM25-like. (464 aa)    
Predicted Functional Partners:
LOC115197530
TBC1 domain family member 15-like.
      
 0.596
LOC115208688
Keratin, type I cytoskeletal 19-like.
    
 
 0.585
LOC115178508
Keratin, type I cytoskeletal 19-like.
    
 
 0.585
LOC115164427
TBC1 domain family member 15-like.
      
 0.489
LOC115177340
TBC1 domain family member 15-like.
      
 0.489
LOC115196854
Heat shock factor-binding protein 1-like.
      
 0.480
ENSSTUP00000045943
annotation not available
      
 0.480
LOC115169484
Homeobox and leucine zipper protein Homez-like.
  
 
  0.461
ENSSTUP00000023803
Adenylate kinase 9.
     
  0.453
ENSSTUP00000007693
annotation not available
    
  0.449
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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