Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115205071NHP2-like protein 1. (131 aa)    
Predicted Functional Partners:
nop58
NOP58 ribonucleoprotein.
   
 0.998
ENSSTUP00000044375
NOP56 ribonucleoprotein homolog.
   
 0.996
nop56
NOP56 ribonucleoprotein.
   
 0.996
utp15
UTP15 small subunit processome component.
   
 0.993
LOC115176402
rRNA 2'-O-methyltransferase fibrillarin-like.
   
 0.990
LOC115176402-2
rRNA 2'-O-methyltransferase fibrillarin-like.
   
 0.986
ppih
Peptidylprolyl isomerase H.
  
 0.973
ENSSTUP00000001196
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.972
LOC115176592
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 0.972
LOC115150322
U3 small nucleolar RNA-interacting protein 2-like.
   
 0.970
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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