LOC115197058 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115197058

Insulin-like growth factor 2 mRNA-binding protein 1. (601 aa)

Predicted Functional Partners:

LOC115196208

0.687

LOC115158051

0.687

LOC115179737

0.687

LOC115151614

0.687

LOC115208096

0.669

ENSSTUP00000048910

0.669

LOC115150330

0.669

LOC115176658

0.635

LOC115203084

0.635

LOC115176844

0.635

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTUP00000048910	LOC115151614	ENSSTUP00000048910	ENSSTUP00000100123	annotation not available	ELAV-like protein 1.	0.660
ENSSTUP00000048910	LOC115158051	ENSSTUP00000048910	ENSSTUP00000040704	annotation not available	ELAV-like protein 1.	0.660
ENSSTUP00000048910	LOC115179737	ENSSTUP00000048910	ENSSTUP00000098194	annotation not available	ELAV-like protein 1.	0.660
ENSSTUP00000048910	LOC115196208	ENSSTUP00000048910	ENSSTUP00000002034	annotation not available	ELAV-like protein 1.	0.660
ENSSTUP00000048910	LOC115197058	ENSSTUP00000048910	ENSSTUP00000001533	annotation not available	Insulin-like growth factor 2 mRNA-binding protein 1.	0.669
LOC115150330	LOC115151614	ENSSTUP00000089879	ENSSTUP00000100123	Double-stranded RNA-binding protein Staufen homolog 1-like.	ELAV-like protein 1.	0.660
LOC115150330	LOC115158051	ENSSTUP00000089879	ENSSTUP00000040704	Double-stranded RNA-binding protein Staufen homolog 1-like.	ELAV-like protein 1.	0.660
LOC115150330	LOC115179737	ENSSTUP00000089879	ENSSTUP00000098194	Double-stranded RNA-binding protein Staufen homolog 1-like.	ELAV-like protein 1.	0.660
LOC115150330	LOC115196208	ENSSTUP00000089879	ENSSTUP00000002034	Double-stranded RNA-binding protein Staufen homolog 1-like.	ELAV-like protein 1.	0.660
LOC115150330	LOC115197058	ENSSTUP00000089879	ENSSTUP00000001533	Double-stranded RNA-binding protein Staufen homolog 1-like.	Insulin-like growth factor 2 mRNA-binding protein 1.	0.669
LOC115151614	ENSSTUP00000048910	ENSSTUP00000100123	ENSSTUP00000048910	ELAV-like protein 1.	annotation not available	0.660
LOC115151614	LOC115150330	ENSSTUP00000100123	ENSSTUP00000089879	ELAV-like protein 1.	Double-stranded RNA-binding protein Staufen homolog 1-like.	0.660
LOC115151614	LOC115197058	ENSSTUP00000100123	ENSSTUP00000001533	ELAV-like protein 1.	Insulin-like growth factor 2 mRNA-binding protein 1.	0.687
LOC115151614	LOC115208096	ENSSTUP00000100123	ENSSTUP00000031220	ELAV-like protein 1.	Double-stranded RNA-binding protein Staufen homolog 1-like.	0.660
LOC115158051	ENSSTUP00000048910	ENSSTUP00000040704	ENSSTUP00000048910	ELAV-like protein 1.	annotation not available	0.660
LOC115158051	LOC115150330	ENSSTUP00000040704	ENSSTUP00000089879	ELAV-like protein 1.	Double-stranded RNA-binding protein Staufen homolog 1-like.	0.660
LOC115158051	LOC115197058	ENSSTUP00000040704	ENSSTUP00000001533	ELAV-like protein 1.	Insulin-like growth factor 2 mRNA-binding protein 1.	0.687
LOC115158051	LOC115208096	ENSSTUP00000040704	ENSSTUP00000031220	ELAV-like protein 1.	Double-stranded RNA-binding protein Staufen homolog 1-like.	0.660
LOC115176658	LOC115197058	ENSSTUP00000015050	ENSSTUP00000001533	Protein lin-28 homolog A-like.	Insulin-like growth factor 2 mRNA-binding protein 1.	0.635
LOC115176844	LOC115197058	ENSSTUP00000103841	ENSSTUP00000001533	Protein lin-28 homolog A-like.	Insulin-like growth factor 2 mRNA-binding protein 1.	0.635