Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001552Zgc:112148. (212 aa)    
Predicted Functional Partners:
yipf1
Yip1 domain family member 1.
   
 
 0.697
ENSSTUP00000024783
Yip1 domain family, member 2.
   
 
 0.697
ENSSTUP00000105609
Yip1 domain family, member 2.
   
 
 0.697
ENSSTUP00000107976
annotation not available
   
 
 0.697
ENSSTUP00000035182
Yip1 domain family, member 3.
   
 
 0.676
LOC115153097
Protein YIPF3-like.
   
 
 0.676
ULK2
Serine/threonine-protein kinase ULK2-like.
    
   0.634
LOC115200038
Serine/threonine-protein kinase ULK1-like.
    
   0.634
LOC115204015
Serine/threonine-protein kinase ULK1-like.
    
   0.634
LOC115206463
Serine/threonine-protein kinase ULK2-like.
    
   0.634
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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