Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115179348Histone deacetylase complex subunit SAP18-like. (156 aa)    
Predicted Functional Partners:
LOC115171788
RNA-binding protein with serine-rich domain 1-like.
   
 0.980
ENSSTUP00000068234
annotation not available
   
 0.980
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.980
LOC115192265
Protein mago nashi homolog.
   
 0.974
LOC115158682
Protein mago nashi homolog.
   
 0.974
LOC115162122
Pinin-like.
    
 0.973
LOC115172394
Pinin-like.
    
 0.973
LOC115178890
Eukaryotic initiation factor 4A-III.
   
 0.944
LOC115178890-2
Eukaryotic initiation factor 4A-III.
   
 0.944
LOC115194396
Apoptotic chromatin condensation inducer in the nucleus-like.
   
 0.938
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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