Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115192184Protein ABHD8-like. (466 aa)    
Predicted Functional Partners:
LOC115205223
Malate synthase-like.
    
 0.797
ENSSTUP00000039923
annotation not available
  
 0.735
LOC115171899
acyl-CoA synthetase family member 2, mitochondrial-like.
  
 0.735
LOC115208128
acyl-CoA synthetase family member 2, mitochondrial-like.
  
 0.735
ENSSTUP00000058352
annotation not available
  
 0.735
acsf2
acyl-CoA synthetase family member 2.
  
 0.735
ENSSTUP00000013526
annotation not available
  
 0.705
ndufab1
NADH:ubiquinone oxidoreductase subunit AB1.
  
 0.705
LOC115161138
ATP synthase subunit O, mitochondrial-like.
   
 0.701
ENSSTUP00000018589
ATP synthase peripheral stalk subunit OSCP.
   
 0.701
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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