Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115197076Nuclear receptor subfamily 1 group D member 1-like. (607 aa)    
Predicted Functional Partners:
ENSSTUP00000006901
Neuronal PAS domain protein 2.
    
 0.920
LOC115154557
Neuronal PAS domain-containing protein 2-like.
    
 0.920
LOC115197465
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
 0.904
LOC115152254
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
 0.904
LOC115203055
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
 0.904
LOC115167293
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
    
 0.904
nfil3
Nuclear factor, interleukin 3 regulated.
   
 0.896
LOC115154316
Nuclear receptor corepressor 1-like.
    
 0.889
LOC115148853
Nuclear receptor corepressor 1-like.
    
 0.889
ENSSTUP00000004646
Clock circadian regulator a.
    
 0.884
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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