Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115192185DENN domain-containing protein 1B-like. (889 aa)    
Predicted Functional Partners:
RAB35
RAB35, member RAS oncogene family.
    
 0.907
RAB35-2
Ras-related protein Rab-35.
    
 0.907
LOC115170796
Ras-related protein Rab-35-like.
    
 0.881
LOC115192133
Ras-related protein Rab-35-like.
    
 0.881
ENSSTUP00000054008
annotation not available
    
 0.674
ift27
Intraflagellar transport 27.
    
 0.674
LOC115155510
Ras-related protein Rab-15-like.
     
 0.632
LOC115175138
Ras-related protein Rab-15-like.
     
 0.632
LOC115169587
Ras-related protein Rab-28-like.
     
 0.629
RAB28
Ras-related protein Rab-28.
     
 0.629
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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