Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115205261Decapping and exoribonuclease protein-like. (439 aa)    
Predicted Functional Partners:
LOC115194772
5'-3' exoribonuclease 2-like.
   
 
 0.954
LOC115174957
5'-3' exoribonuclease 2-like.
   
 
 0.954
rpap2
RNA polymerase II associated protein 2.
   
   0.891
exosc4
Exosome component 4.
   
 
 0.883
ENSSTUP00000074032
annotation not available
   
   0.863
exosc7
Exosome component 7.
   
   0.863
nol9
Nucleolar protein 9.
   
 
 0.858
ENSSTUP00000088588
Exosome component 10.
   
 
 0.857
LOC115166705
DNA-directed RNA polymerase II subunit RPB7-like.
    
 
 0.849
LOC115205758
DNA-directed RNA polymerase II subunit RPB7.
    
 
 0.849
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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