Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LHX9LIM/homeobox protein Lhx9. (398 aa)    
Predicted Functional Partners:
LOC115173556
Zinc transporter Slc39a7-like.
      
 0.889
LOC115205097
LIM domain-binding protein 2.
    
 0.786
LOC115152982
LIM domain-binding protein 1-like.
    
 0.786
ENSSTUP00000058689
LIM domain binding 2a.
    
 0.786
LOC115194038
LIM domain-binding protein 1-like.
    
 0.786
LOC115147536
LIM domain-binding protein 1.
    
 0.786
ENSSTUP00000004974
Von Willebrand factor A domain containing 8.
    
 
 0.781
LOC115198972
Protein phosphatase 1 regulatory subunit 12A-like.
    
 
 0.718
LOC115153451
Chitin synthase-like.
      
 0.714
LOC115169860
Protein phosphatase 1 regulatory subunit 7-like.
    
 
 0.705
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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