Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115167170Polyadenylate-binding protein-interacting protein 2-like. (124 aa)    
Predicted Functional Partners:
LOC115177521
E3 ubiquitin-protein ligase UBR5.
    
 
 0.668
ENSSTUP00000056820
Ubiquitin protein ligase E3 component n-recognin 5.
    
 
 0.668
EIF4G1
Eukaryotic translation initiation factor 4 gamma 1-like.
    
 
 0.436
EIF4G1-2
Eukaryotic translation initiation factor 4 gamma 1-like.
    
 
 0.436
ENSSTUP00000037393
Eukaryotic translation initiation factor 4, gamma 2a.
    
 
 0.436
LOC115155016
Uncharacterized LOC115155016.
    
 
 0.436
ENSSTUP00000052603
annotation not available
    
 
 0.436
LOC115195721
Eukaryotic translation initiation factor 4 gamma 1-like.
    
 
 0.436
LOC115195722
Uncharacterized LOC115195722.
    
 
 0.436
LOC115200416
Polyadenylate-binding protein-interacting protein 1-like.
    
 
 0.436
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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