Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prr18Proline rich 18. (249 aa)    
Predicted Functional Partners:
ENSSTUP00000036639
Component of oligomeric golgi complex 6.
    
   0.717
YKT6
Synaptobrevin homolog YKT6.
    
 
 0.702
YKT6-2
Synaptobrevin homolog YKT6-like.
    
 
 0.702
LOC115159788
Synaptobrevin homolog YKT6-like.
    
 
 0.702
LOC115150444
Syntaxin-16-like.
    
   0.673
LOC115207977
Syntaxin-16-like.
    
   0.673
ENSSTUP00000081099
Family with sequence similarity 43 member B.
   
  
 0.672
LOC115197639
Vesicle transport protein GOT1B-like.
   
 
 0.657
LOC115150303
Vesicle transport protein GOT1A-like.
   
 
 0.657
ENSSTUP00000088043
Golgi transport 1Bb.
   
 
 0.657
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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