Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115191713Rho guanine nucleotide exchange factor 38-like. (832 aa)    
Predicted Functional Partners:
LOC115193841
Heat shock 70 kDa protein 12A-like.
   
 
 0.859
LOC115153157
Heat shock 70 kDa protein 12A-like.
   
 
 0.859
arhgef16
Rho guanine nucleotide exchange factor 16.
     
 0.795
rabepk
Rab9 effector protein with kelch motifs.
    
 
 0.758
ENSSTUP00000040064
Intersectin 1 (SH3 domain protein).
    
 0.756
ENSSTUP00000053905
annotation not available
    
 0.756
ENSSTUP00000070599
Intersectin 2b.
    
 0.756
ENSSTUP00000091247
Intersectin 1 (SH3 domain protein).
    
 0.756
LOC115150657
Cell division control protein 42 homolog.
    
 0.743
ENSSTUP00000047803
annotation not available
    
 0.743
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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