Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001754Tetratricopeptide repeat domain 7A. (893 aa)    
Predicted Functional Partners:
ENSSTUP00000065868
Phosphatidylinositol 4-kinase, catalytic, alpha a.
   
 
 0.878
ENSSTUP00000075526
annotation not available
   
 
 0.878
ENSSTUP00000044532
EFR3 homolog Ba (S. cerevisiae).
   
 
 0.873
LOC115187073
Protein EFR3 homolog B.
   
 
 0.873
efr3a
EFR3 homolog A.
   
 
 0.873
FAM126A
Hyccin-like.
    
 
 0.858
LOC115175365
Hyccin-like.
    
 
 0.858
FAM126B
Family with sequence similarity 126 member B.
    
 
 0.742
c33h2orf50
Chromosome 33 C2orf50 homolog.
    
   0.666
LOC115177521
E3 ubiquitin-protein ligase UBR5.
    
 
 0.653
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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