Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115189536U4/U6 small nuclear ribonucleoprotein Prp3-like. (711 aa)    
Predicted Functional Partners:
prpf4
pre-mRNA processing factor 4.
   
 0.997
ENSSTUP00000114624
annotation not available
   
 0.997
ppih
Peptidylprolyl isomerase H.
    
 0.994
PRPF6
pre-mRNA processing factor 6.
   
 0.992
prpf6
pre-mRNA processing factor 6.
   
 0.992
ENSSTUP00000001196
PRP31 pre-mRNA processing factor 31 homolog (yeast).
   
 0.991
ENSSTUP00000017231
Smx5.
    
 0.991
LOC115176592
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.991
LOC115154673
U4/U6.U5 tri-snRNP-associated protein 1-like.
   
 0.987
LOC115204270
U4/U6.U5 tri-snRNP-associated protein 1-like.
   
 0.987
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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