Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001776GRAM domain containing 2Aa. (344 aa)    
Predicted Functional Partners:
gramd2b
GRAM domain containing 2B.
    
 
 0.687
LOC115205973
Sodium channel subunit beta-4-like.
    
 0.673
LOC115163013
Sodium channel subunit beta-4-like.
    
 0.673
LOC115199126
Coatomer subunit gamma-2.
    
   0.638
LOC115180523
Coatomer subunit gamma-2.
    
   0.638
LOC115157287
Coatomer subunit alpha.
    
   0.587
LOC115169511
Coatomer subunit alpha-like.
    
   0.587
LOC115162950
Coatomer subunit delta-like.
    
   0.580
LOC115205905
Coatomer subunit delta-like.
    
   0.580
LOC115154960
Coatomer subunit delta-like.
    
   0.580
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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