Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC115176860Regulation of nuclear pre-mRNA domain-containing protein 2-like. (1216 aa)    
Predicted Functional Partners:
rpap2
RNA polymerase II associated protein 2.
   
 0.972
LOC115166705
DNA-directed RNA polymerase II subunit RPB7-like.
    
  0.915
LOC115205758
DNA-directed RNA polymerase II subunit RPB7.
    
  0.915
LOC115173986
Regulation of nuclear pre-mRNA domain-containing protein 1A-like.
    
 0.891
ENSSTUP00000086913
Regulation of nuclear pre-mRNA domain containing 1B.
    
 0.891
LOC115175496
Regulation of nuclear pre-mRNA domain-containing protein 1A-like.
    
 0.891
ENSSTUP00000105155
Regulation of nuclear pre-mRNA domain containing 1B.
    
 0.891
ENSSTUP00000070694
Polymerase (RNA) II (DNA directed) polypeptide I.
    
  0.874
pcf11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.871
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
   
 0.870
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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