Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001848annotation not available (107 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
   0.531
ENSSTUP00000098266
annotation not available
   
 0.527
ENSSTUP00000098867
annotation not available
   
 0.527
ENSSTUP00000004813
Netrin g1a.
    
  0.522
LOC115170189
netrin-G1-like.
    
  0.522
LOC115195355
netrin-G1-like.
    
  0.522
LOC115157587
netrin-G1-like.
    
  0.522
ENSSTUP00000088343
annotation not available
    
  0.513
rad50
RAD50 double strand break repair protein.
    
 0.484
ENSSTUP00000115085
annotation not available
  
 
  0.480
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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