Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
LOC115193939Multiple coagulation factor deficiency protein 2 homolog. (153 aa)    
Predicted Functional Partners:
lman1
Lectin, mannose binding 1.
   
 0.995
LOC115159076
Protein ERGIC-53-like.
   
 0.995
LOC115168558
Coagulation factor VIII-like.
     
 0.801
f5
Coagulation factor V.
     
 0.801
LOC115205598
Coagulation factor VIII-like.
     
 0.801
ENSSTUP00000023999
SEC24 homolog C, COPII coat complex component.
     
 0.755
LOC115201193
Protein transport protein Sec24C-like.
     
 0.755
brca2
BRCA2 DNA repair associated.
     
  0.721
LOC115164906
EGF-like repeat and discoidin I-like domain-containing protein 3.
     
 0.717
CTSC
Dipeptidyl peptidase 1-like.
     
 0.708
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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