LOC115196318 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115196318

Folate transporter 1-like. (537 aa)

Predicted Functional Partners:

SLC25A19

0.683

ATP5F1B

0.667

LOC115179432

0.667

ENSSTUP00000012480

0.661

LOC115206595

0.661

LOC115172729

0.652

LOC115162442

0.652

ENSSTUP00000052164

0.646

slc46a1

0.646

LOC115175993

0.612

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5F1B	LOC115196318	ENSSTUP00000099098	ENSSTUP00000001931	ATP synthase subunit beta, mitochondrial.	Folate transporter 1-like.	0.667
ENSSTUP00000012480	LOC115162442	ENSSTUP00000012480	ENSSTUP00000111896	mutS homolog 4.	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	0.682
ENSSTUP00000012480	LOC115172729	ENSSTUP00000012480	ENSSTUP00000053890	mutS homolog 4.	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	0.682
ENSSTUP00000012480	LOC115196318	ENSSTUP00000012480	ENSSTUP00000001931	mutS homolog 4.	Folate transporter 1-like.	0.661
ENSSTUP00000052164	LOC115196318	ENSSTUP00000052164	ENSSTUP00000001931	annotation not available	Folate transporter 1-like.	0.646
ENSSTUP00000052164	LOC115206595	ENSSTUP00000052164	ENSSTUP00000044802	annotation not available	Folate receptor alpha-like.	0.669
LOC115162442	ENSSTUP00000012480	ENSSTUP00000111896	ENSSTUP00000012480	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	mutS homolog 4.	0.682
LOC115162442	LOC115175993	ENSSTUP00000111896	ENSSTUP00000055787	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	Probable thiopurine S-methyltransferase.	0.411
LOC115162442	LOC115196318	ENSSTUP00000111896	ENSSTUP00000001931	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	Folate transporter 1-like.	0.652
LOC115172729	ENSSTUP00000012480	ENSSTUP00000053890	ENSSTUP00000012480	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	mutS homolog 4.	0.682
LOC115172729	LOC115175993	ENSSTUP00000053890	ENSSTUP00000055787	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	Probable thiopurine S-methyltransferase.	0.411
LOC115172729	LOC115196318	ENSSTUP00000053890	ENSSTUP00000001931	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	Folate transporter 1-like.	0.652
LOC115175993	LOC115162442	ENSSTUP00000055787	ENSSTUP00000111896	Probable thiopurine S-methyltransferase.	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	0.411
LOC115175993	LOC115172729	ENSSTUP00000055787	ENSSTUP00000053890	Probable thiopurine S-methyltransferase.	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	0.411
LOC115175993	LOC115196318	ENSSTUP00000055787	ENSSTUP00000001931	Probable thiopurine S-methyltransferase.	Folate transporter 1-like.	0.612
LOC115179432	LOC115196318	ENSSTUP00000111875	ENSSTUP00000001931	ATP synthase subunit beta, mitochondrial.	Folate transporter 1-like.	0.667
LOC115196318	ATP5F1B	ENSSTUP00000001931	ENSSTUP00000099098	Folate transporter 1-like.	ATP synthase subunit beta, mitochondrial.	0.667
LOC115196318	ENSSTUP00000012480	ENSSTUP00000001931	ENSSTUP00000012480	Folate transporter 1-like.	mutS homolog 4.	0.661
LOC115196318	ENSSTUP00000052164	ENSSTUP00000001931	ENSSTUP00000052164	Folate transporter 1-like.	annotation not available	0.646
LOC115196318	LOC115162442	ENSSTUP00000001931	ENSSTUP00000111896	Folate transporter 1-like.	hydroxymethylglutaryl-CoA lyase, mitochondrial-like.	0.652