Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115191425Protein SOGA3-like. (888 aa)    
Predicted Functional Partners:
ENSSTUP00000035605
Alanine--glyoxylate aminotransferase 2.
     
  0.698
LOC115189549
Nuclear receptor-binding factor 2-like.
    
   0.648
LOC115189549-2
Nuclear receptor-binding factor 2-like.
    
   0.648
LOC115197208
Catalase.
     
  0.625
CAT
Catalase-like.
     
  0.625
LOC115178817
Catalase-like.
     
  0.625
LOC115201360
Glycerol-3-phosphate phosphatase-like.
     
  0.608
ENSSTUP00000009917
annotation not available
     
  0.608
hoga1
4-hydroxy-2-oxoglutarate aldolase 1.
     
  0.608
LOC115200260
Pyridoxal phosphate phosphatase-like.
     
  0.608
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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