Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC115203320Probable ATP-dependent RNA helicase DDX28. (573 aa)    
Predicted Functional Partners:
ENSSTUP00000002553
Neuroguidin, EIF4E binding protein.
   
 0.980
fastkd2
FAST kinase domains 2.
   
 
 0.969
utp3
UTP3 small subunit processome component.
   
  0.969
ENSSTUP00000022136
WD repeat domain 46.
   
 0.951
LOC115204415
U3 small nucleolar RNA-associated protein 14 homolog A-like.
   
 0.942
ENSSTUP00000083910
annotation not available
  
 
 0.932
mrm3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.932
ddx49
DEAD-box helicase 49.
  
 
0.924
ddx52
DExD-box helicase 52.
  
0.923
LOC115150251
Mitochondrial RNA pseudouridine synthase rpusd4-like.
  
 
 0.920
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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