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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115203320Probable ATP-dependent RNA helicase DDX28. (573 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.997
ENSSTUP00000002553
Neuroguidin, EIF4E binding protein.
   
 0.996
ENSSTUP00000022136
WD repeat domain 46.
   
 0.974
nop14
NOP14 nucleolar protein.
   
 0.969
ddx52
DExD-box helicase 52.
  
0.969
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.961
ENSSTUP00000101303
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
 
 0.961
ENSSTUP00000083910
annotation not available
  
 
 0.955
mrm3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.955
ENSSTUP00000064033
WD repeat domain 12.
   
 0.954
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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