Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115171030Eukaryotic translation initiation factor 1. (119 aa)    
Predicted Functional Partners:
LOC115205834
RING finger protein 151-like.
  
 
 0.948
RPS2
RING finger protein 151-like.
  
 
 0.948
ENSSTUP00000060694
annotation not available
  
 
 0.940
LOC115198981
40S ribosomal protein S16-like.
  
 
 0.940
LOC115198593
40S ribosomal protein S4.
  
 
 0.935
LOC115190148
40S ribosomal protein S4-like.
  
 
 0.935
ENSSTUP00000001683
annotation not available
   
   0.934
LOC115169781
Ubiquitin-like protein FUBI.
   
   0.934
ENSSTUP00000060436
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
   0.934
ENSSTUP00000077803
FAU ubiquitin like and ribosomal protein S30 fusion b.
   
   0.934
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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