Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lsm11LSM11, U7 small nuclear RNA associated. (378 aa)    
Predicted Functional Partners:
lsm10
LSM10, U7 small nuclear RNA associated.
    
 0.999
snrpb
Small nuclear ribonucleoprotein polypeptides B and B1.
    
 0.991
LOC115165358
Small nuclear ribonucleoprotein G.
    
 0.990
LOC115150656
Small nuclear ribonucleoprotein E.
    
 0.988
LOC115150656-2
Small nuclear ribonucleoprotein E.
    
 0.988
ENSSTUP00000047658
annotation not available
    
 0.974
SNRPF
Small nuclear ribonucleoprotein F-like.
    
 0.974
LOC115180441
Small nuclear ribonucleoprotein F.
    
 0.974
LOC115152397
Small nuclear ribonucleoprotein F-like.
    
 0.974
ddx20
DEAD-box helicase 20.
    
 
 0.970
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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