Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000001993annotation not available (255 aa)    
Predicted Functional Partners:
ENSSTUP00000037734
Matrix metallopeptidase 9.
    
 0.679
LOC115168666
Matrix metalloproteinase-9-like.
    
 0.679
LOC115165649
Integrin alpha-5-like.
    
 0.649
ENSSTUP00000016716
Integrin, alpha 2b.
    
 0.649
LOC115180239
Integrin alpha-8-like.
    
 0.649
itgav
Integrin subunit alpha V.
    
 0.649
LOC115167991
Integrin alpha-5-like.
    
 0.649
LOC115170938
Integrin alpha-IIb-like.
    
 0.649
LOC115176728
Integrin alpha-8-like.
    
 0.649
LOC115150153
Integrin alpha-5-like.
    
 0.649
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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