Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115191484Terminal nucleotidyltransferase 5A-like. (439 aa)    
Predicted Functional Partners:
BCCIP
Protein BCCIP homolog.
    
 
 0.726
ENSSTUP00000104557
BRCA2 and CDKN1A interacting protein.
    
 
 0.726
LOC115162262
Serine/threonine-protein kinase PLK4-like.
    
 
 0.602
LOC115172555
Serine/threonine-protein kinase PLK4-like.
    
 
 0.602
ENSSTUP00000057622
Centrosomal protein 192.
    
 
 0.440
ENSSTUP00000058462
annotation not available
    
 
 0.440
ENSSTUP00000058503
annotation not available
    
 
 0.440
LOC115198155
Splicing factor 1-like.
    
   0.422
SF1
Splicing factor 1-like.
    
   0.422
fndc3a
Fibronectin type III domain containing 3A.
    
 
 0.419
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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