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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115155940Pantothenate kinase 1-like. (469 aa)    
Predicted Functional Partners:
coasy
Coenzyme A synthase.
    
 0.977
ppcdc
Phosphopantothenoylcysteine decarboxylase.
     
 0.974
ENSSTUP00000062717
Phosphopantothenoylcysteine synthetase.
     
 0.912
ppcs
Phosphopantothenoylcysteine synthetase.
     
 0.912
ENSSTUP00000023542
Pantothenate kinase 4 (inactive).
     
0.872
LOC115205900
NLR family member X1-like.
    
  0.868
dcakd
dephospho-CoA kinase domain containing.
    
 0.844
LOC115171139
Max-like protein X.
     
 0.839
LOC115198241
Max-like protein X.
     
 0.839
dhx33
DEAH-box helicase 33.
     
 0.824
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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