Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smad1SMAD family member 1. (474 aa)    
Predicted Functional Partners:
SMAD4
SMAD family member 4.
   
0.969
LOC115149222
Mothers against decapentaplegic homolog 4-like.
   
0.969
SMAD4-2
SMAD family member 4.
   
0.969
LOC115159360
Mothers against decapentaplegic homolog 4-like.
   
0.969
smad7
SMAD family member 7.
    
0.963
SMAD7
SMAD family member 7.
    
 0.963
LOC115175836
Synaptotagmin-11-like.
   
0.960
LOC115180008
Mothers against decapentaplegic homolog 4-like.
   
0.960
LOC115173628
Mothers against decapentaplegic homolog 4-like.
   
0.960
ENSSTUP00000103917
Si:dkey-222b8.1.
   
0.960
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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