STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaf11DDB1 and CUL4 associated factor 11. (541 aa)    
Predicted Functional Partners:
LOC115202851
DNA damage-binding protein 1.
    
 0.985
LOC115167557
DNA damage-binding protein 1-like.
    
 0.985
COPS6
COP9 signalosome subunit 6.
    
 0.942
ENSSTUP00000046028
annotation not available
    
 0.942
LOC115205069
cullin-4B-like.
    
 0.939
CUL4B
cullin-4B-like.
    
 0.939
LOC115179496
cullin-4A-like.
    
 0.939
LOC115186247
cullin-4A-like.
    
 0.939
LOC115201095
COP9 signalosome complex subunit 3-like.
    
  0.908
cops3
COP9 signalosome subunit 3.
    
  0.908
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.