Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115200355U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like. (160 aa)    
Predicted Functional Partners:
ENSSTUP00000047583
Ubiquitin specific peptidase 39.
   
 0.919
LOC115164456
U4/U6.U5 tri-snRNP-associated protein 2-like.
   
 0.919
ENSSTUP00000007296
Calcium homeostasis endoplasmic reticulum protein.
    
   0.816
LOC115158150
Calcium homeostasis endoplasmic reticulum protein-like.
    
   0.816
LOC115154673
U4/U6.U5 tri-snRNP-associated protein 1-like.
     
 0.778
LOC115204270
U4/U6.U5 tri-snRNP-associated protein 1-like.
     
 0.778
ENSSTUP00000017231
Smx5.
   
 
 0.770
LOC115169291
U6 snRNA-associated Sm-like protein LSm7.
    
 0.748
LOC115157522
U6 snRNA-associated Sm-like protein LSm7.
    
 0.748
ENSSTUP00000036308
SRSF protein kinase 1b.
    
 
 0.687
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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