GABARAPL2 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTUP00000049415	ENSSTUP00000078948	ENSSTUP00000049415	ENSSTUP00000078948	NBR1 autophagy cargo receptor b.	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	0.989
ENSSTUP00000049415	GABARAPL2	ENSSTUP00000049415	ENSSTUP00000002385	NBR1 autophagy cargo receptor b.	Gamma-aminobutyric acid receptor-associated protein-like 2.	0.972
ENSSTUP00000049415	LOC115151469	ENSSTUP00000049415	ENSSTUP00000024013	NBR1 autophagy cargo receptor b.	Cysteine protease ATG4B-like.	0.453
ENSSTUP00000049415	LOC115158311	ENSSTUP00000049415	ENSSTUP00000075181	NBR1 autophagy cargo receptor b.	Next to BRCA1 gene 1 protein-like.	0.966
ENSSTUP00000049415	LOC115158872	ENSSTUP00000049415	ENSSTUP00000045151	NBR1 autophagy cargo receptor b.	Cysteine protease ATG4B-like.	0.453
ENSSTUP00000049415	LOC115171261	ENSSTUP00000049415	ENSSTUP00000058249	NBR1 autophagy cargo receptor b.	Next to BRCA1 gene 1 protein-like.	0.951
ENSSTUP00000049415	LOC115179817	ENSSTUP00000049415	ENSSTUP00000100008	NBR1 autophagy cargo receptor b.	Ubiquitin-like-conjugating enzyme ATG3.	0.652
ENSSTUP00000049415	LOC115196450	ENSSTUP00000049415	ENSSTUP00000056348	NBR1 autophagy cargo receptor b.	Ubiquitin-like-conjugating enzyme ATG3.	0.652
ENSSTUP00000049415	LOC115201067	ENSSTUP00000049415	ENSSTUP00000017442	NBR1 autophagy cargo receptor b.	Next to BRCA1 gene 1 protein-like.	0.966
ENSSTUP00000049415	atg7	ENSSTUP00000049415	ENSSTUP00000106638	NBR1 autophagy cargo receptor b.	Autophagy related 7.	0.859
ENSSTUP00000078948	ENSSTUP00000049415	ENSSTUP00000078948	ENSSTUP00000049415	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	NBR1 autophagy cargo receptor b.	0.989
ENSSTUP00000078948	GABARAPL2	ENSSTUP00000078948	ENSSTUP00000002385	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Gamma-aminobutyric acid receptor-associated protein-like 2.	0.971
ENSSTUP00000078948	LOC115158311	ENSSTUP00000078948	ENSSTUP00000075181	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Next to BRCA1 gene 1 protein-like.	0.989
ENSSTUP00000078948	LOC115171261	ENSSTUP00000078948	ENSSTUP00000058249	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Next to BRCA1 gene 1 protein-like.	0.989
ENSSTUP00000078948	LOC115179817	ENSSTUP00000078948	ENSSTUP00000100008	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Ubiquitin-like-conjugating enzyme ATG3.	0.518
ENSSTUP00000078948	LOC115196450	ENSSTUP00000078948	ENSSTUP00000056348	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Ubiquitin-like-conjugating enzyme ATG3.	0.518
ENSSTUP00000078948	LOC115201067	ENSSTUP00000078948	ENSSTUP00000017442	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Next to BRCA1 gene 1 protein-like.	0.989
ENSSTUP00000078948	atg7	ENSSTUP00000078948	ENSSTUP00000106638	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Autophagy related 7.	0.586
GABARAPL2	ENSSTUP00000049415	ENSSTUP00000002385	ENSSTUP00000049415	Gamma-aminobutyric acid receptor-associated protein-like 2.	NBR1 autophagy cargo receptor b.	0.972
GABARAPL2	ENSSTUP00000078948	ENSSTUP00000002385	ENSSTUP00000078948	Gamma-aminobutyric acid receptor-associated protein-like 2.	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	0.971