Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115207529Myb-related protein B-like. (653 aa)    
Predicted Functional Partners:
LIN9
Protein lin-9 homolog.
    
 0.981
LOC115186347
Protein lin-9 homolog.
    
 0.981
LOC115164515
Protein lin-37 homolog.
    
 0.980
LOC115177346
Protein lin-37 homolog.
    
 0.980
LOC115162346
Protein lin-52 homolog.
    
 0.974
LIN52
Protein lin-52 homolog.
    
 0.974
LOC115205091
cyclin-A2-like.
  
 0.966
ENSSTUP00000030527
Lin-54 DREAM MuvB core complex component.
    
 0.964
LOC115149318
Protein lin-54 homolog.
    
 0.964
LOC115196941
Protein lin-54 homolog.
    
 0.960
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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