STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115200361Erlin-2. (344 aa)    
Predicted Functional Partners:
LOC115176007
E3 ubiquitin-protein ligase RNF5-like.
   
 0.807
LOC115156497
Transmembrane and ubiquitin-like domain-containing protein 1.
    
 
 0.807
LOC115149196
E3 ubiquitin-protein ligase RNF185-like.
   
 0.807
RNF5
Ring finger protein 5.
   
 0.807
LOC115159408
E3 ubiquitin-protein ligase RNF185.
   
 0.807
LOC115195938
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like.
   
    0.758
ALG11
GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like.
   
    0.758
CWC25
pre-mRNA-splicing factor CWC25 homolog.
   
    0.753
LOC115178393
pre-mRNA-splicing factor CWC25 homolog.
   
    0.753
DERL1
Derlin-1-like.
    
 0.746
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.