Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115176618CDC42 small effector protein 1-like. (75 aa)    
Predicted Functional Partners:
CDC42
Cell division control protein 42 homolog.
    
 
 0.756
LOC115150657
Cell division control protein 42 homolog.
    
   0.608
ENSSTUP00000047803
annotation not available
    
   0.608
LOC115165776
Cell division control protein 42 homolog.
    
   0.608
LOC115201434
Cdc42 effector protein 4-like.
      
 0.589
LOC115152879
Cdc42 effector protein 4-like.
      
 0.589
pnpla4
Patatin like phospholipase domain containing 4.
      
 0.560
ENSSTUP00000109433
annotation not available
      
 0.560
ENSSTUP00000065141
annotation not available
      
 0.533
ENSSTUP00000108993
FLII actin remodeling protein.
      
 0.533
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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