Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115202456Scavenger receptor cysteine-rich type 1 protein M130-like. (453 aa)    
Predicted Functional Partners:
ENSSTUP00000065691
annotation not available
    
 0.720
LOC115155005
CD166 antigen homolog.
     
  0.621
LOC115163477
CD166 antigen homolog.
     
  0.621
LOC115206394
CD166 antigen homolog A-like.
     
  0.621
LOC115171215
Hemoglobin subunit beta-1.
    
  0.604
LOC115198944
Hemoglobin subunit beta.
    
  0.604
LOC115171214
Hemoglobin subunit beta-like.
    
  0.604
LOC115171217
Hemoglobin subunit alpha-4.
    
  0.586
LOC115199016
Hemoglobin subunit alpha-1-like.
    
  0.586
ENSSTUP00000003514
annotation not available
    
  0.586
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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