STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115152897Rho guanine nucleotide exchange factor 4-like. (2865 aa)    
Predicted Functional Partners:
LOC115159183
Adenomatous polyposis coli protein-like.
   
 0.944
LOC115149367
Adenomatous polyposis coli protein-like.
   
 0.944
LOC115151644
Adenomatous polyposis coli protein 2-like.
   
 0.943
apc2
APC regulator of WNT signaling pathway 2.
   
 0.943
rac3
Rac family small GTPase 3.
    
 0.850
LOC115150657
Cell division control protein 42 homolog.
    
 0.811
ENSSTUP00000047803
annotation not available
    
 0.811
LOC115165776
Cell division control protein 42 homolog.
    
 0.811
CDC42
Cell division control protein 42 homolog.
    
 0.811
RAC1
Ras-related C3 botulinum toxin substrate 1-like.
    
 0.783
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.